Number of diseases
32
Number of miRNAs
2211
Number of genes
19438
AmiCa is an atlas of miRNA-gene expression in cancer.
We performed an integrative analysis of miRNA-target gene interactions (MTI) on high-throughput molecular profiling of cancer samples obtained from The Cancer Genome Atlas (TCGA). Our study results in correlated MTIs. Our analysis provides a catalogue of MTIs that can serve as a starting point in testing more targeted hypotheses and dealing with cancer functional experiments.
Diseases
To see miRNA and gene expression and their correlations in more detail in samples of a specific disease, select the disease name.
Adrenocortical carcinoma (ACC)
Bladder urothelial carcinoma (BLCA)
Breast invasive carcinoma (BRCA)
Cervical and endocervical cancers (CESC)
Cholangiocarcinoma (CHOL)
Colon adenocarcinoma (COAD)
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (DLBC)
Esophageal carcinoma (ESCA)
Head and Neck squamous cell carcinoma (HNSC)
Kidney Chromophobe (KICH) Kidney renal clear cell carcinoma (KIRC)Kidney renal papillary cell carcinoma (KIRP)Acute Myeloid Leukemia (LAML)
Brain Lower Grade Glioma (LGG)
Liver hepatocellular carcinoma (LIHC)
Lung adenocarcinoma (LUAD)Lung squamous cell carcinoma (LUSC)Mesothelioma (MESO)
Ovarian serous cystadenocarcinoma (OV)
Pancreatic adenocarcinoma (PAAD)
Pheochromocytoma and Paraganglioma (PCPG)
Prostate adenocarcinoma (PRAD)
Citation
If you use “AmiCa”, please cite:
Hauptman N., Pižem J. & Jevšinek Skok D. AmiCa: Atlas of miRNA-gene correlations in cancer. Computational and Structural Biotechnology Journal 23 (1. december 2024): 2277–88, doi:10.1016/j.csbj.2024.05.030.